Publications

2025

De novo annotation reveals transcriptomic complexity across the hexaploid wheat pan-genome

Anthony Hall, Anthony Hall, Benjamen White, Rachel Rusholme-Pilcher, Susan Duncan, Hannah Rees, Jonathan Wright, Ryan Joynson, Joshua Colmer, Benedict Coombes, Naomi Irish, Suzanne Henderson, Karim Gharbi, Leah Catchpole, Tom Barker, Wilfried Haerty, Gemy Kaithakottil, David Swarbreck, James Simmonds, Cristobal Uauy, Philippa Borrill, Thomas Lux, Heidrun Gundlach, Klaus Mayer, Manuel Spannagl, Helen Chapman, Angela Juhasz, Moeko Okada, Hirokazu Handa, Shuhei Nasuda, Kentaro Shimizu, Daniel Lang, Guy Naamati, Sabrina Ward, Erik Legg, Arvind Bharti, Michelle Colgrave, Jesse Poland, Simon Krattinger, Nils Stein, Curtis Pozniak, Utpal Bose, and 10 plus Wheat genome project

Nature Communications (16) 8538

NASUDA Shuhei

2025

Unveiling yellow rust resistance in the near-Himalayan region: insights from a nested association mapping study

Katharina Jung, Reiko Akiyama, Jilu Nie, Miyuki Nitta, Naoto-Benjamin Hamaya, Naeela Qureshi, Sridhar Bhavani, Thomas Wicker, Beat Keller, Masahiro Kishii, Shuhei Nasuda & Kentaro K. Shimizu

Theor Appl Genet (138:135)

NASUDA Shuhei

2024

Population Genomics Reveals Demographic History and Climate Adaptation in Japanese Arabidopsis halleri

SUDA Ryo, Shosei Kubota, Vinod Kumar, Vincent Castric, Ute Krämer, Shin-Ichi Morinaga, Takashi Tsuchimatsu

Plant and Cell Physiology

SUDA Ryo

2024

Reducing herbivory in mixed planting by genomic prediction of neighbor effects in the field

Yasuhiro Sato, Rie Shimizu-Inatsugi, Kazuya Takeda, Bernhard Schmid, Atsushi J Nagano, Kentaro K Shimizu

Nature Communications (15) 8467

SHIMIZU Kentaro

2024

Seasonal switching of integrated leaf senescence controls in an evergreen perennial Arabidopsis

YUMOTO Genki, Haruki Nishio, Tomoaki Muranaka, Jiro Sugisaka, Mie N. Honjo & Hiroshi Kudoh

Nature Communications (15) 4719

YUMOTO Genki

2024

Diversity of genome size and chromosome number in homothallic and heterothallic strains of the Closterium peracerosum–strigosum–littorale complex (Desmidiales, Zygnematophyceae, Streptophyta)

TSUCHIKANE Yuki, Yuki Tsuchikane, Misaki Watanabe, Yawako W. Kawaguchi, Koichi Uehara, Tomoaki Nishiyama, Hiroyuki Sekimoto, Takashi Tsuchimatsu

Journal of Phycology (60) 654-67

TSUCHIKANE Yuki

2024

Submicron-scale chromatin architecture in Cycas revoluta pollen nuclei

TOYAMA Yukiho, HIGASHIYAMA Tetsuya

Mol Reprod Dev (91) e23726

TOYAMA Yukiho

2023

Genome editing approaches using reproductive cells/tissues in flowering plants

Toda Erika, Kato Norio、Higashiyama Tetsuya、Okamoto Takashi

Frontiers in Genome Editing (4) 1085023

HIGASHIYAMA Tetsuya

2023

Dominance in self-compatibility between subgenomes of allopolyploid Arabidopsis kamchatica shown by transgenic restoration of self-incompatibility

Chow-Lih Yew, Takashi Tsuchimatsu, Rie Shimizu-Inatsugi, Shinsuke Yasuda, Masaomi Hatakeyama, Hiroyuki Kakui, Takuma Ohta, Keita Suwabe, Masao Watanabe, Seiji Takayama & Kentaro K. Shimizu

Nature Communications (14) 7618

SHIMIZU Kentaro

2023

Seasonal pigment fluctuation in diploid and polyploid Arabidopsis revealed by machine learning-based phenotyping method PlantServation

Reiko Akiyama, Takao Goto, Toshiaki Tameshige, Jiro Sugisaka, Ken Kuroki, Jianqiang Sun, Junichi Akita, Masaomi Hatakeyama, Hiroshi Kudoh, Tanaka Kenta, Aya Tonouchi, Yuki Shimahara, Jun Sese, Natsumaro Kutsuna, Rie Shimizu-Inatsugi & Kentaro K. Shimizu

Nature Communications 5792

SHIMIZU Kentaro